Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | FBD94_13175 | Not Available | Positive | 3328618 - 3332229 | 133425.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_13180 | Not Available | Positive | 3332242 - 3333705 | 55132.6 |
| redoxin domain-containing protein | FBD94_13185 | Not Available | Positive | 3333740 - 3335257 | 56376.3 |
| hypothetical protein | FBD94_13190 | Not Available | Positive | 3335296 - 3337230 | 73891.1 |
| tigr01212 family radical sam protein | FBD94_13195 | Not Available | Positive | 3337387 - 3338343 | 36371.9 |
| ammonium transporter | FBD94_13200 | Not Available | Positive | 3338702 - 3340072 | 48557.1 |
| porin | FBD94_13205 | Not Available | Positive | 3340117 - 3341175 | 37490.9 |
| duf4468 domain-containing protein | FBD94_13210 | Not Available | Positive | 3341239 - 3341820 | 21632.2 |
| hypothetical protein | FBD94_13215 | Not Available | Negative | 3341821 - 3342294 | 17760.6 |
| hypothetical protein | FBD94_13220 | Not Available | Positive | 3342514 - 3342732 | 8724.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

