Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | FBD94_13125 | Not Available | Positive | 3318479 - 3319915 | 53954.1 |
| hypothetical protein | FBD94_13130 | Not Available | Positive | 3319926 - 3320759 | 31507.9 |
| redoxin domain-containing protein | FBD94_13135 | Not Available | Positive | 3320728 - 3322677 | 72353.0 |
| hypothetical protein | FBD94_13140 | Not Available | Negative | 3322690 - 3323067 | 13861.0 |
| sterol desaturase family protein | FBD94_13145 | Not Available | Positive | 3323289 - 3324053 | 30285.3 |
| ahpc/tsa family protein | FBD94_13150 | Not Available | Positive | 3324082 - 3325230 | 42191.2 |
| ompa family protein | FBD94_13155 | Not Available | Positive | 3325382 - 3325909 | 18860.6 |
| hypothetical protein | FBD94_13160 | Not Available | Positive | 3326004 - 3326546 | 20644.4 |
| rna polymerase sigma-70 factor | FBD94_13165 | Not Available | Negative | 3326549 - 3327139 | 22547.1 |
| duf4974 domain-containing protein | FBD94_13170 | Not Available | Positive | 3327252 - 3328493 | 46570.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

