Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FBD94_13075 | Not Available | Positive | 3303444 - 3303755 | 11521.1 |
| ahpc/tsa family protein | FBD94_13080 | Not Available | Positive | 3303910 - 3304884 | 37272.1 |
| hypothetical protein | FBD94_13085 | Not Available | Positive | 3304912 - 3305862 | 35359.1 |
| tail-specific protease | FBD94_13090 | Not Available | Positive | 3305852 - 3307933 | 77317.0 |
| sigma-70 family rna polymerase sigma factor | FBD94_13095 | Not Available | Positive | 3307958 - 3308506 | 21357.9 |
| duf4974 domain-containing protein | FBD94_13100 | Not Available | Positive | 3308513 - 3309664 | 43361.4 |
| tlpa family protein disulfide reductase | FBD94_13105 | Not Available | Positive | 3309764 - 3311164 | 53949.4 |
| m1 family metallopeptidase | FBD94_13110 | Not Available | Positive | 3311143 - 3313725 | 97192.8 |
| ahpc/tsa family protein | FBD94_13115 | Not Available | Positive | 3313736 - 3314866 | 41250.5 |
| susc/raga family tonb-linked outer membrane protein | FBD94_13120 | Not Available | Positive | 3314894 - 3318469 | 131418.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

