Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lyse family translocator | FBD94_12825 | Not Available | Negative | 3225492 - 3226121 | 23664.8 |
| dcmp deaminase family protein | FBD94_12830 | Not Available | Positive | 3226252 - 3226716 | 16722.0 |
| glutamine-hydrolyzing gmp synthase | FBD94_12835 | Not Available | Positive | 3226764 - 3228290 | 56210.4 |
| amino acid abc transporter substrate-binding protein | FBD94_12840 | Not Available | Positive | 3228247 - 3229473 | 45892.4 |
| rsmb/nop family class i sam-dependent rna methyltransferase | FBD94_12845 | Not Available | Positive | 3229470 - 3230636 | 44645.4 |
| duf4450 domain-containing protein | FBD94_12850 | Not Available | Positive | 3231041 - 3234466 | 127361.0 |
| response regulator | FBD94_12855 | Not Available | Positive | 3234467 - 3238888 | 165760.0 |
| hypothetical protein | FBD94_12860 | Not Available | Positive | 3239025 - 3241304 | 83894.9 |
| susc/raga family tonb-linked outer membrane protein | FBD94_12865 | Not Available | Positive | 3241324 - 3244626 | 121641.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_12870 | Not Available | Positive | 3244637 - 3246190 | 58638.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

