Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cbs domain-containing protein | FBD94_12775 | Not Available | Positive | 3213300 - 3213962 | 24564.5 |
| nad kinase | FBD94_12780 | Not Available | Positive | 3214001 - 3214882 | 32999.8 |
| hypothetical protein | FBD94_12785 | Not Available | Positive | 3214884 - 3215681 | 30295.6 |
| isoprenyl transferase | FBD94_12790 | Not Available | Positive | 3215701 - 3216441 | 28312.8 |
| outer membrane protein assembly factor bama | FBD94_12795 | Not Available | Positive | 3216556 - 3219072 | 93725.0 |
| omph family outer membrane protein | FBD94_12800 | Not Available | Positive | 3219210 - 3219740 | 20519.8 |
| omph family outer membrane protein | FBD94_12805 | Not Available | Positive | 3219784 - 3220344 | 20350.5 |
| glutamate racemase | FBD94_12810 | Not Available | Positive | 3220409 - 3221239 | 30819.9 |
| amidophosphoribosyltransferase | FBD94_12815 | Not Available | Positive | 3221493 - 3223394 | 71899.1 |
| pdz domain-containing protein | FBD94_12820 | Not Available | Positive | 3223637 - 3225343 | 61652.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

