Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf5009 domain-containing protein | FBD94_12675 | Not Available | Positive | 3185707 - 3186909 | 44791.7 |
| glycoside hydrolase family 18 protein | FBD94_12680 | Not Available | Positive | 3186963 - 3187991 | 38099.6 |
| thua domain-containing protein | FBD94_12685 | Not Available | Negative | 3187995 - 3188840 | 32753.8 |
| tonb-dependent receptor | FBD94_12690 | Not Available | Positive | 3189192 - 3192266 | 113215.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_12695 | Not Available | Positive | 3192281 - 3194158 | 70185.7 |
| duf4982 domain-containing protein | FBD94_12700 | Not Available | Positive | 3194159 - 3196870 | 102255.0 |
| alginate lyase | FBD94_12705 | Not Available | Positive | 3196885 - 3198069 | 45263.8 |
| glucuronyl hydrolase | FBD94_12710 | Not Available | Positive | 3198102 - 3199277 | 44383.9 |
| glycosyl hydrolase | FBD94_12715 | Not Available | Positive | 3199288 - 3200739 | 54564.1 |
| glucosylceramidase | FBD94_12720 | Not Available | Positive | 3200746 - 3202143 | 51548.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

