Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| t9ss type a sorting domain-containing protein | FBD94_12575 | Not Available | Negative | 3150411 - 3150872 | 17084.8 |
| potassium transporter kup | FBD94_12580 | Not Available | Positive | 3151148 - 3153100 | 72720.4 |
| cupin domain-containing protein | FBD94_12585 | Not Available | Negative | 3153218 - 3153616 | 14520.1 |
| rna polymerase sigma-70 factor | FBD94_12590 | Not Available | Positive | 3153805 - 3154401 | 23292.8 |
| duf4974 domain-containing protein | FBD94_12595 | Not Available | Positive | 3154466 - 3155689 | 44859.8 |
| susc/raga family tonb-linked outer membrane protein | FBD94_12600 | Not Available | Positive | 3155898 - 3159317 | 124813.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | FBD94_12605 | Not Available | Positive | 3159348 - 3160958 | 60333.3 |
| hypothetical protein | FBD94_12610 | Not Available | Positive | 3160977 - 3162029 | 39456.5 |
| t9ss type b sorting domain-containing protein | FBD94_12615 | Not Available | Positive | 3162085 - 3165348 | 118261.0 |
| type ix secretion system membrane protein porp/sprf | FBD94_12620 | Not Available | Positive | 3165351 - 3166265 | 32908.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

