Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | FBD94_01180 | Not Available | Positive | 293405 - 294220 | 31449.0 |
| phosphohydrolase | FBD94_01185 | Not Available | Positive | 294238 - 294768 | 20863.4 |
| hypothetical protein | FBD94_01190 | Not Available | Positive | 295586 - 296371 | 30406.4 |
| hypothetical protein | FBD94_01195 | Not Available | Negative | 296509 - 297003 | 18250.5 |
| response regulator transcription factor | FBD94_01200 | Not Available | Negative | 297243 - 297989 | 28277.4 |
| sensor histidine kinase | FBD94_01205 | Not Available | Negative | 297994 - 299607 | 61744.6 |
| deor/glpr transcriptional regulator | FBD94_01215 | Not Available | Negative | 300124 - 300873 | 27720.9 |
| tonb-dependent receptor | FBD94_01220 | Not Available | Positive | 301318 - 304407 | 114161.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_01225 | Not Available | Positive | 304416 - 306221 | 68834.7 |
| duf1735 domain-containing protein | FBD94_01230 | Not Available | Positive | 306250 - 307449 | 42843.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

