Pedobacter hiemivivus

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter hiemivivus is a bacterium characterized by the presence of flagella, which indicates its capability for motility. This motility can be an important trait for its ecological interactions, potentially aiding in its movement within various environments. The organism possesses two replicons, suggesting a complex genomic structure that may contribute to its adaptability and survival in diverse conditions. The type strains of Pedobacter hiemivivus are cataloged under the accessions SJSM00000000.1 and SWDX00000000.1, which provide a basis for further genetic and functional studies of this species. These accessions are essential for researchers looking to explore the genomic features and biochemical pathways of P. hiemivivus, which may reveal insights into its ecological roles and interactions. In terms of ecological significance, the flagellated nature of Pedobacter hiemivivus could imply a degree of environmental resilience, allowing it to navigate through different substrates or microenvironments. This ability to move could enhance its nutrient acquisition and influence its interactions with other microbial communities. Overall, the traits of Pedobacter hiemivivus highlight its potential importance in the microbial ecosystems it inhabits, particularly in terms of mobility and adaptability.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter hiemivivus
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter hiemivivus strain RP-1-16 contig36, whole genome

Gene Summary

Adenine Count

1965080 bp

Thymine Count

1938424 bp

Guanine Count

1297924 bp

Cytosine Count

1239067 bp

Genome Length

6440511 bp

Protein-coding Genes

5065 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-directed rna polymerase subunit beta'FBD94_12425Not AvailablePositive3116386 - 3120672159828.0
duf3467 domain-containing proteinFBD94_12430Not AvailablePositive3120763 - 312107711635.9
trna (adenosine(37)-n6)-dimethylallyltransferase miaaFBD94_12435Not AvailableNegative3121074 - 312199134541.3
plasmid pria4b orf-3 family proteinFBD94_12440Not AvailableNegative3121991 - 312264425154.5
hd domain-containing proteinFBD94_12445Not AvailableNegative3122702 - 312410853492.9
threonylcarbamoyl-amp synthaseFBD94_12450Not AvailableNegative3124135 - 312470120774.9
glycosyltransferase family 4 proteinFBD94_12455Not AvailableNegative3124757 - 312587242047.4
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferaseFBD94_12460Not AvailableNegative3125877 - 312669829777.5
rna-binding s4 domain-containing proteinFBD94_12465Not AvailablePositive3126774 - 312717215086.3
ecsc family proteinFBD94_12470Not AvailableNegative3127169 - 312790628136.6

Displaying genes 2471 – 2480 of 10481 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.