Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-directed rna polymerase subunit beta' | FBD94_12425 | Not Available | Positive | 3116386 - 3120672 | 159828.0 |
| duf3467 domain-containing protein | FBD94_12430 | Not Available | Positive | 3120763 - 3121077 | 11635.9 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | FBD94_12435 | Not Available | Negative | 3121074 - 3121991 | 34541.3 |
| plasmid pria4b orf-3 family protein | FBD94_12440 | Not Available | Negative | 3121991 - 3122644 | 25154.5 |
| hd domain-containing protein | FBD94_12445 | Not Available | Negative | 3122702 - 3124108 | 53492.9 |
| threonylcarbamoyl-amp synthase | FBD94_12450 | Not Available | Negative | 3124135 - 3124701 | 20774.9 |
| glycosyltransferase family 4 protein | FBD94_12455 | Not Available | Negative | 3124757 - 3125872 | 42047.4 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | FBD94_12460 | Not Available | Negative | 3125877 - 3126698 | 29777.5 |
| rna-binding s4 domain-containing protein | FBD94_12465 | Not Available | Positive | 3126774 - 3127172 | 15086.3 |
| ecsc family protein | FBD94_12470 | Not Available | Negative | 3127169 - 3127906 | 28136.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

