Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mbl fold metallo-hydrolase | FBD94_12075 | Not Available | Negative | 3031453 - 3032886 | 53839.5 |
| hypothetical protein | FBD94_12080 | Not Available | Negative | 3032904 - 3033653 | 26562.6 |
| hypothetical protein | FBD94_12085 | Not Available | Negative | 3033673 - 3035145 | 56272.4 |
| beta-carotene 15,15'-monooxygenase | FBD94_12090 | Not Available | Negative | 3035160 - 3036494 | 50949.1 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_12095 | Not Available | Negative | 3036504 - 3037871 | 51058.2 |
| tonb-dependent receptor | FBD94_12100 | Not Available | Negative | 3037891 - 3040986 | 113143.0 |
| Trna-phe | Not Available | Not Available | Positive | 3041448 - 3041520 | Not Available |
| response regulator | FBD94_12110 | Not Available | Positive | 3041771 - 3045826 | 153249.0 |
| lyase | FBD94_12115 | Not Available | Positive | 3045920 - 3048982 | 114932.0 |
| sulfatase | FBD94_12120 | Not Available | Positive | 3048984 - 3050408 | 52787.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

