Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor | FBD94_12025 | Not Available | Positive | 3015770 - 3016342 | 22129.8 |
| duf4974 domain-containing protein | FBD94_12030 | Not Available | Positive | 3016446 - 3017585 | 42093.8 |
| tonb-dependent receptor | FBD94_12035 | Not Available | Positive | 3017718 - 3021119 | 124814.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_12040 | Not Available | Positive | 3021132 - 3022823 | 63317.7 |
| coagulation factor 5/8 type domain-containing protein | FBD94_12045 | Not Available | Positive | 3022810 - 3024432 | 59707.7 |
| glycoside hydrolase family 97 protein | FBD94_12050 | Not Available | Positive | 3024447 - 3026387 | 73785.5 |
| glycosyl hydrolase | FBD94_12055 | Not Available | Positive | 3026408 - 3027517 | 42267.2 |
| glycoside hydrolase family 125 protein | FBD94_12060 | Not Available | Positive | 3027532 - 3028947 | 52798.2 |
| glycoside hydrolase | FBD94_12065 | Not Available | Positive | 3028992 - 3030029 | 39962.9 |
| nad(p)/fad-dependent oxidoreductase | FBD94_12070 | Not Available | Negative | 3030010 - 3031446 | 51027.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

