Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding cassette domain-containing protein | FBD94_01130 | Not Available | Positive | 276645 - 277580 | 34573.9 |
| abc transporter permease | FBD94_01135 | Not Available | Positive | 277585 - 279837 | 83110.3 |
| duf4974 domain-containing protein | FBD94_01140 | Not Available | Positive | 279911 - 281032 | 41234.2 |
| susc/raga family tonb-linked outer membrane protein | FBD94_01145 | Not Available | Positive | 281226 - 284900 | 137326.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_01150 | Not Available | Positive | 284913 - 286313 | 52104.8 |
| alpha/beta hydrolase | FBD94_01155 | Not Available | Negative | 286430 - 287200 | 29064.9 |
| aldo/keto reductase | FBD94_01160 | Not Available | Positive | 287421 - 288476 | 38374.6 |
| osmc family protein | FBD94_01165 | Not Available | Positive | 288649 - 289062 | 14683.2 |
| alpha/beta hydrolase | FBD94_01170 | Not Available | Positive | 289076 - 290002 | 34477.6 |
| gaf domain-containing protein | FBD94_01175 | Not Available | Negative | 289996 - 293235 | 122130.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

