Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | FBD94_11925 | Not Available | Positive | 2989214 - 2989696 | 18689.6 |
| rna polymerase sigma-70 factor | FBD94_11930 | Not Available | Positive | 2989779 - 2990372 | 23125.0 |
| duf4974 domain-containing protein | FBD94_11935 | Not Available | Positive | 2990410 - 2991594 | 44562.2 |
| tonb-dependent receptor | FBD94_11940 | Not Available | Positive | 2991842 - 2995303 | 126790.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_11945 | Not Available | Positive | 2995315 - 2996883 | 56776.5 |
| hypothetical protein | FBD94_11950 | Not Available | Positive | 2996890 - 2998020 | 40349.5 |
| acetylxylan esterase | FBD94_11955 | Not Available | Positive | 2998041 - 2999372 | 49225.5 |
| glycoside hydrolase family 16 protein | FBD94_11960 | Not Available | Positive | 2999377 - 3000237 | 31737.1 |
| mbl fold metallo-hydrolase | FBD94_11965 | Not Available | Negative | 3000290 - 3001087 | 29651.4 |
| (fe-s)-binding protein | FBD94_11970 | Not Available | Negative | 3001077 - 3001877 | 29429.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

