Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | FBD94_11775 | Not Available | Negative | 2957596 - 2958687 | 39720.2 |
| abc transporter atp-binding protein | FBD94_11780 | Not Available | Negative | 2958695 - 2959465 | 28724.6 |
| glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit | FBD94_11785 | Not Available | Negative | 2959465 - 2960577 | 40997.9 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | FBD94_11790 | Not Available | Positive | 2960976 - 2961791 | 29564.7 |
| rlua family pseudouridine synthase | FBD94_11795 | Not Available | Positive | 2961791 - 2962477 | 25862.3 |
| alpha-galactosidase | FBD94_11800 | Not Available | Positive | 2962611 - 2964164 | 57483.9 |
| hypothetical protein | FBD94_11805 | Not Available | Positive | 2964167 - 2964640 | 17875.3 |
| glycoside hydrolase | FBD94_11810 | Not Available | Positive | 2964637 - 2966319 | 60074.4 |
| hypothetical protein | FBD94_11815 | Not Available | Negative | 2966322 - 2966804 | 17829.3 |
| duf4974 domain-containing protein | FBD94_11820 | Not Available | Positive | 2966987 - 2968021 | 38010.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

