Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | FBD94_11625 | Not Available | Negative | 2917499 - 2920855 | 123726.0 |
| duf5117 domain-containing protein | FBD94_11630 | Not Available | Negative | 2920877 - 2923498 | 98512.2 |
| hypothetical protein | FBD94_11635 | Not Available | Negative | 2923621 - 2925240 | 61808.2 |
| hypothetical protein | FBD94_11640 | Not Available | Negative | 2925534 - 2926766 | 46232.5 |
| amino acid abc transporter substrate-binding protein | FBD94_11645 | Not Available | Positive | 2927171 - 2927857 | 25919.2 |
| hypothetical protein | FBD94_11650 | Not Available | Negative | 2927854 - 2928285 | 16616.2 |
| duf1211 domain-containing protein | FBD94_11655 | Not Available | Positive | 2928639 - 2929226 | 21833.3 |
| succinate--coa ligase subunit alpha | FBD94_11660 | Not Available | Positive | 2929300 - 2930172 | 29779.3 |
| methionine-r-sulfoxide reductase | FBD94_11665 | Not Available | Positive | 2930347 - 2930826 | 18016.7 |
| septal ring lytic transglycosylase rlpa family protein | FBD94_11670 | Not Available | Positive | 2930963 - 2931367 | 14722.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

