Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna pseudouridine(38-40) synthase trua | FBD94_11575 | Not Available | Positive | 2909394 - 2910173 | 29568.2 |
| abc transporter atp-binding protein | FBD94_11580 | Not Available | Positive | 2910170 - 2911945 | 66779.2 |
| addiction module antidote protein, higa family | FBD94_11585 | Not Available | Negative | 2912063 - 2912353 | 11283.7 |
| plasmid maintenance system killer family protein | FBD94_11590 | Not Available | Negative | 2912359 - 2912640 | 11205.6 |
| acr3 family arsenite efflux transporter | FBD94_11595 | Not Available | Negative | 2912774 - 2913832 | 39175.1 |
| arsenate reductase arsc | FBD94_11600 | Not Available | Negative | 2913843 - 2914262 | 15595.4 |
| hypothetical protein | FBD94_11605 | Not Available | Negative | 2914285 - 2914854 | 20680.7 |
| winged helix-turn-helix transcriptional regulator | FBD94_11610 | Not Available | Negative | 2914893 - 2915222 | 11719.4 |
| response regulator transcription factor | FBD94_11615 | Not Available | Negative | 2915327 - 2916076 | 28515.6 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_11620 | Not Available | Negative | 2916165 - 2917487 | 49630.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

