Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-glucosidase | FBD94_11525 | Not Available | Positive | 2897781 - 2899118 | 50620.6 |
| duf2007 domain-containing protein | FBD94_11530 | Not Available | Positive | 2899155 - 2899370 | 7990.54 |
| aconitate hydratase | FBD94_11535 | Not Available | Negative | 2899455 - 2901731 | 81920.4 |
| polysaccharide deacetylase family protein | FBD94_11540 | Not Available | Negative | 2901890 - 2902507 | 24009.0 |
| tolc family protein | FBD94_11545 | Not Available | Positive | 2902551 - 2903918 | 50732.5 |
| efflux rnd transporter periplasmic adaptor subunit | FBD94_11550 | Not Available | Positive | 2903951 - 2905309 | 48733.2 |
| nad(p)h-dependent glycerol-3-phosphate dehydrogenase | FBD94_11555 | Not Available | Positive | 2905385 - 2906383 | 37115.1 |
| hypothetical protein | FBD94_11560 | Not Available | Positive | 2906443 - 2906790 | 12467.4 |
| dead/deah box helicase | FBD94_11565 | Not Available | Negative | 2906867 - 2908753 | 69120.7 |
| duf4293 family protein | FBD94_11570 | Not Available | Negative | 2908841 - 2909305 | 16979.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

