Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | FBD94_01075 | Not Available | Positive | 258639 - 261452 | 104352.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_01080 | Not Available | Positive | 261462 - 263174 | 63538.1 |
| metallophosphoesterase | FBD94_01085 | Not Available | Positive | 263203 - 264792 | 59311.8 |
| rna polymerase sigma-70 factor | FBD94_01095 | Not Available | Positive | 266013 - 266618 | 23784.5 |
| duf4974 domain-containing protein | FBD94_01100 | Not Available | Positive | 266779 - 268038 | 46889.4 |
| tonb-dependent receptor | FBD94_01105 | Not Available | Positive | 268210 - 271746 | 129464.0 |
| hypothetical protein | FBD94_01110 | Not Available | Positive | 271761 - 273182 | 52671.8 |
| ahpc/tsa family protein | FBD94_01115 | Not Available | Positive | 273193 - 274362 | 44115.2 |
| carboxypeptidase regulatory-like domain-containing protein | FBD94_01120 | Not Available | Positive | 274423 - 275853 | 50115.5 |
| rna polymerase sigma-70 factor | FBD94_01125 | Not Available | Positive | 275992 - 276573 | 22466.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

