Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate kinase | FBD94_11475 | Not Available | Positive | 2885972 - 2887447 | 53638.1 |
| xylose isomerase | FBD94_11480 | Not Available | Positive | 2887471 - 2888802 | 49863.4 |
| sodium/solute symporter | FBD94_11485 | Not Available | Positive | 2888857 - 2890533 | 60430.2 |
| laci family transcriptional regulator | FBD94_11490 | Not Available | Positive | 2890617 - 2891630 | 37400.2 |
| sdr family oxidoreductase | FBD94_11495 | Not Available | Negative | 2891638 - 2892378 | 26100.9 |
| peptidylprolyl isomerase | FBD94_11500 | Not Available | Positive | 2892582 - 2893043 | 16720.6 |
| hypothetical protein | FBD94_11505 | Not Available | Positive | 2893070 - 2893603 | 19051.1 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | FBD94_11510 | Not Available | Negative | 2893871 - 2894344 | 18198.2 |
| dna mismatch repair protein muts | FBD94_11515 | Not Available | Positive | 2894438 - 2896252 | 68439.9 |
| alpha/beta fold hydrolase | FBD94_11520 | Not Available | Negative | 2896268 - 2897701 | 52225.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

