Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-directed rna polymerase subunit alpha | FBD94_11375 | Not Available | Positive | 2862778 - 2863770 | 37228.9 |
| 50s ribosomal protein l17 | FBD94_11380 | Not Available | Positive | 2863863 - 2864375 | 19013.7 |
| hypothetical protein | FBD94_11385 | Not Available | Negative | 2864435 - 2864989 | 21672.0 |
| sam-dependent methyltransferase | FBD94_11390 | Not Available | Positive | 2865044 - 2866255 | 45613.3 |
| molecular chaperone dnak | FBD94_11395 | Not Available | Positive | 2866427 - 2868343 | 68657.1 |
| nucleotidyltransferase | FBD94_11400 | Not Available | Negative | 2868418 - 2869317 | 33831.0 |
| duf853 family protein | FBD94_11405 | Not Available | Negative | 2869416 - 2870960 | 55802.2 |
| m42 family metallopeptidase | FBD94_11410 | Not Available | Negative | 2871073 - 2872188 | 41603.8 |
| gnat family n-acetyltransferase | FBD94_11415 | Not Available | Negative | 2872242 - 2872658 | 15777.0 |
| acyl-coa carboxylase subunit beta | FBD94_11420 | Not Available | Negative | 2872677 - 2874233 | 56927.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

