Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | FBD94_11070 | Not Available | Positive | 2808401 - 2809777 | 50874.7 |
| duf5004 domain-containing protein | FBD94_11075 | Not Available | Positive | 2809802 - 2810299 | 18284.1 |
| hypothetical protein | FBD94_11080 | Not Available | Positive | 2810307 - 2811083 | 27901.2 |
| susf/suse family outer membrane protein | FBD94_11085 | Not Available | Positive | 2811094 - 2812554 | 52114.3 |
| alpha-amylase | FBD94_11090 | Not Available | Positive | 2812574 - 2814439 | 70719.5 |
| beta-phosphoglucomutase | FBD94_11095 | Not Available | Positive | 2814440 - 2815105 | 23724.6 |
| glycoside hydrolase family 65 protein | FBD94_11100 | Not Available | Positive | 2815168 - 2817483 | 88584.7 |
| alpha-amylase | FBD94_11105 | Not Available | Positive | 2817480 - 2819228 | 65546.4 |
| slc45 family mfs transporter | FBD94_11110 | Not Available | Positive | 2819238 - 2820611 | 50640.8 |
| alpha-amylase | FBD94_11115 | Not Available | Positive | 2820630 - 2822546 | 71503.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

