Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | FBD94_11020 | Not Available | Positive | 2791145 - 2794411 | 118634.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | FBD94_11025 | Not Available | Positive | 2794424 - 2795983 | 58290.5 |
| hypothetical protein | FBD94_11030 | Not Available | Positive | 2796008 - 2797558 | 55243.2 |
| metallophosphoesterase | FBD94_11035 | Not Available | Positive | 2797791 - 2799203 | 53408.4 |
| glycerophosphodiester phosphodiesterase | FBD94_11040 | Not Available | Positive | 2799401 - 2800303 | 33655.0 |
| glycerol-3-phosphate transporter | FBD94_11045 | Not Available | Positive | 2800393 - 2801733 | 49673.4 |
| sialate o-acetylesterase | FBD94_11050 | Not Available | Positive | 2801772 - 2802464 | 25872.6 |
| acyl-coa desaturase | FBD94_11055 | Not Available | Negative | 2802471 - 2803628 | 44211.6 |
| laci family transcriptional regulator | FBD94_11060 | Not Available | Positive | 2803832 - 2804845 | 38366.0 |
| susc/raga family tonb-linked outer membrane protein | FBD94_11065 | Not Available | Positive | 2805320 - 2808376 | 111327.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

