Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein | FBD94_01025 | Not Available | Positive | 244451 - 245446 | 37183.4 |
| s8 family peptidase | FBD94_01030 | Not Available | Positive | 245465 - 247975 | 93994.0 |
| hypothetical protein | FBD94_01035 | Not Available | Negative | 248356 - 248730 | 14402.6 |
| hypothetical protein | FBD94_01040 | Not Available | Negative | 248708 - 249577 | 33258.7 |
| hypothetical protein | FBD94_01045 | Not Available | Negative | 249691 - 250947 | 48555.6 |
| hypothetical protein | FBD94_01050 | Not Available | Negative | 251325 - 251591 | 10503.6 |
| sigma-70 family rna polymerase sigma factor | FBD94_01055 | Not Available | Positive | 251731 - 252288 | 21816.5 |
| duf4974 domain-containing protein | FBD94_01060 | Not Available | Positive | 252356 - 253294 | 35998.8 |
| tonb-dependent receptor | FBD94_01065 | Not Available | Positive | 253430 - 256807 | 124429.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_01070 | Not Available | Positive | 256834 - 258621 | 68347.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

