Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor | FBD94_10920 | Not Available | Positive | 2767619 - 2768209 | 22419.3 |
| fecr family protein | FBD94_10925 | Not Available | Positive | 2768276 - 2769475 | 44861.9 |
| susc/raga family tonb-linked outer membrane protein | FBD94_10930 | Not Available | Positive | 2769624 - 2773271 | 135177.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_10935 | Not Available | Positive | 2773283 - 2774740 | 54938.0 |
| hypothetical protein | FBD94_10940 | Not Available | Positive | 2774771 - 2775643 | 33017.5 |
| duf4302 domain-containing protein | FBD94_10945 | Not Available | Positive | 2775667 - 2776617 | 35665.8 |
| tetratricopeptide repeat protein | FBD94_10950 | Not Available | Negative | 2777037 - 2777708 | 24792.5 |
| dna replication/repair protein recf | FBD94_10955 | Not Available | Positive | 2777913 - 2779016 | 42751.5 |
| duf721 domain-containing protein | FBD94_10960 | Not Available | Positive | 2779009 - 2779299 | 10800.5 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | FBD94_10965 | Not Available | Negative | 2779540 - 2780271 | 26501.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

