Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lytic transglycosylase domain-containing protein | FBD94_10870 | Not Available | Positive | 2757729 - 2758520 | 29846.2 |
| 2fe-2s iron-sulfur cluster binding domain-containing protein | FBD94_10875 | Not Available | Positive | 2758615 - 2759667 | 39846.2 |
| excinuclease abc subunit uvra | FBD94_10880 | Not Available | Positive | 2759726 - 2762569 | 106035.0 |
| nad(p)h-hydrate dehydratase | FBD94_10885 | Not Available | Positive | 2762580 - 2763512 | 33260.7 |
| hypothetical protein | FBD94_10890 | Not Available | Negative | 2763517 - 2764374 | 31727.7 |
| sigma-70 family rna polymerase sigma factor | FBD94_10895 | Not Available | Negative | 2764376 - 2764927 | 21015.5 |
| lipoyl synthase | FBD94_10900 | Not Available | Negative | 2764983 - 2765861 | 32964.7 |
| osmc family protein | FBD94_10905 | Not Available | Positive | 2766024 - 2766428 | 14704.5 |
| bacillithiol system redox-active protein ytxj | FBD94_10910 | Not Available | Negative | 2766418 - 2766750 | 12640.9 |
| 6,7-dimethyl-8-ribityllumazine synthase | FBD94_10915 | Not Available | Negative | 2766970 - 2767461 | 17238.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

