Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding protein | FBD94_10770 | Not Available | Positive | 2733810 - 2734520 | 26755.1 |
| beta-n-acetylglucosaminidase | FBD94_10775 | Not Available | Negative | 2734569 - 2736362 | 66321.4 |
| dna mismatch repair endonuclease mutl | FBD94_10780 | Not Available | Positive | 2736507 - 2738378 | 69540.8 |
| rhomboid family intramembrane serine protease | FBD94_10785 | Not Available | Positive | 2738383 - 2739120 | 27605.1 |
| rhomboid family intramembrane serine protease | FBD94_10790 | Not Available | Positive | 2739113 - 2739979 | 32334.8 |
| endonuclease | FBD94_10795 | Not Available | Positive | 2739979 - 2741088 | 42127.2 |
| cysteine--trna ligase | FBD94_10800 | Not Available | Positive | 2741107 - 2742567 | 54843.5 |
| nuclear transport factor 2 family protein | FBD94_10805 | Not Available | Positive | 2742644 - 2743504 | 31599.3 |
| glycerophosphodiester phosphodiesterase | FBD94_10810 | Not Available | Positive | 2743610 - 2744488 | 33184.7 |
| aaa family atpase | FBD94_10815 | Not Available | Negative | 2744498 - 2745460 | 35577.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

