Pedobacter hiemivivus

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter hiemivivus is a bacterium characterized by the presence of flagella, which indicates its capability for motility. This motility can be an important trait for its ecological interactions, potentially aiding in its movement within various environments. The organism possesses two replicons, suggesting a complex genomic structure that may contribute to its adaptability and survival in diverse conditions. The type strains of Pedobacter hiemivivus are cataloged under the accessions SJSM00000000.1 and SWDX00000000.1, which provide a basis for further genetic and functional studies of this species. These accessions are essential for researchers looking to explore the genomic features and biochemical pathways of P. hiemivivus, which may reveal insights into its ecological roles and interactions. In terms of ecological significance, the flagellated nature of Pedobacter hiemivivus could imply a degree of environmental resilience, allowing it to navigate through different substrates or microenvironments. This ability to move could enhance its nutrient acquisition and influence its interactions with other microbial communities. Overall, the traits of Pedobacter hiemivivus highlight its potential importance in the microbial ecosystems it inhabits, particularly in terms of mobility and adaptability.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter hiemivivus
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter hiemivivus strain RP-1-16 contig36, whole genome

Gene Summary

Adenine Count

1965080 bp

Thymine Count

1938424 bp

Guanine Count

1297924 bp

Cytosine Count

1239067 bp

Genome Length

6440511 bp

Protein-coding Genes

5065 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sugar isomeraseFBD94_10465Not AvailablePositive2661520 - 266279446914.0
carbohydrate kinaseFBD94_10470Not AvailablePositive2662810 - 266420152167.9
gntr family transcriptional regulatorFBD94_10475Not AvailablePositive2664221 - 266525239658.2
hypothetical proteinFBD94_10480Not AvailableNegative2665324 - 266603424926.2
1-deoxy-d-xylulose-5-phosphate synthaseFBD94_10485Not AvailableNegative2666180 - 266810870758.9
serine hydroxymethyltransferaseFBD94_10490Not AvailablePositive2668202 - 266947346095.9
pas domain s-box proteinFBD94_10495Not AvailablePositive2669491 - 2672268104718.0
comf family proteinFBD94_10500Not AvailableNegative2672494 - 267319226328.6
23s rrna (adenine(2503)-c(2))-methyltransferase rlmnFBD94_10505Not AvailableNegative2673239 - 267428839701.6
23s rrna pseudouridine(2604) synthase rlufFBD94_10510Not AvailableNegative2674353 - 267539337695.3

Displaying genes 2081 – 2090 of 10481 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.