Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar isomerase | FBD94_10465 | Not Available | Positive | 2661520 - 2662794 | 46914.0 |
| carbohydrate kinase | FBD94_10470 | Not Available | Positive | 2662810 - 2664201 | 52167.9 |
| gntr family transcriptional regulator | FBD94_10475 | Not Available | Positive | 2664221 - 2665252 | 39658.2 |
| hypothetical protein | FBD94_10480 | Not Available | Negative | 2665324 - 2666034 | 24926.2 |
| 1-deoxy-d-xylulose-5-phosphate synthase | FBD94_10485 | Not Available | Negative | 2666180 - 2668108 | 70758.9 |
| serine hydroxymethyltransferase | FBD94_10490 | Not Available | Positive | 2668202 - 2669473 | 46095.9 |
| pas domain s-box protein | FBD94_10495 | Not Available | Positive | 2669491 - 2672268 | 104718.0 |
| comf family protein | FBD94_10500 | Not Available | Negative | 2672494 - 2673192 | 26328.6 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | FBD94_10505 | Not Available | Negative | 2673239 - 2674288 | 39701.6 |
| 23s rrna pseudouridine(2604) synthase rluf | FBD94_10510 | Not Available | Negative | 2674353 - 2675393 | 37695.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

