Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uma2 family endonuclease | FBD94_10210 | Not Available | Negative | 2609294 - 2609953 | 25111.2 |
| uma2 family endonuclease | FBD94_10215 | Not Available | Negative | 2609988 - 2610638 | 25123.0 |
| thymidylate synthase | FBD94_10220 | Not Available | Positive | 2610830 - 2611624 | 30169.1 |
| dihydrofolate reductase | FBD94_10225 | Not Available | Positive | 2611621 - 2612106 | 18146.8 |
| protein translocase subunit secdf | FBD94_10230 | Not Available | Positive | 2612220 - 2615189 | 107841.0 |
| nad(p)/fad-dependent oxidoreductase | FBD94_10235 | Not Available | Positive | 2615297 - 2616622 | 48963.6 |
| hydroxymethylglutaryl-coa lyase | FBD94_10240 | Not Available | Positive | 2616600 - 2617481 | 32533.8 |
| gnat family n-acetyltransferase | FBD94_10245 | Not Available | Negative | 2617476 - 2617904 | 16280.7 |
| low affinity iron permease family protein | FBD94_10250 | Not Available | Negative | 2617870 - 2618367 | 18591.2 |
| class ii fructose-bisphosphate aldolase | FBD94_10255 | Not Available | Negative | 2618475 - 2619554 | 39756.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

