Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (guanine(527)-n(7))-methyltransferase rsmg | FBD94_10160 | Not Available | Negative | 2598100 - 2598726 | 23832.6 |
| glycosyltransferase | FBD94_10165 | Not Available | Negative | 2598723 - 2599817 | 41680.6 |
| trna guanosine(34) transglycosylase tgt | FBD94_10170 | Not Available | Positive | 2600045 - 2601175 | 42442.4 |
| yjgp/yjgq family permease | FBD94_10175 | Not Available | Positive | 2601176 - 2602279 | 42047.6 |
| dmt family transporter | FBD94_10180 | Not Available | Positive | 2602279 - 2603169 | 33320.8 |
| hypothetical protein | FBD94_10185 | Not Available | Positive | 2603638 - 2606448 | 106720.0 |
| hypothetical protein | FBD94_10190 | Not Available | Positive | 2606452 - 2606730 | 10558.0 |
| o-succinylhomoserine sulfhydrylase | FBD94_10195 | Not Available | Negative | 2606846 - 2608012 | 42875.3 |
| osmc family protein | FBD94_10200 | Not Available | Negative | 2608018 - 2608434 | 15239.6 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | FBD94_10205 | Not Available | Negative | 2608443 - 2609246 | 29536.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

