Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor | FBD94_10060 | Not Available | Positive | 2568133 - 2568720 | 22859.5 |
| duf4974 domain-containing protein | FBD94_10065 | Not Available | Positive | 2568825 - 2569973 | 42744.4 |
| susc/raga family tonb-linked outer membrane protein | FBD94_10070 | Not Available | Positive | 2570066 - 2573668 | 133734.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_10075 | Not Available | Positive | 2573681 - 2575156 | 55607.7 |
| hypothetical protein | FBD94_10080 | Not Available | Positive | 2575200 - 2576528 | 49643.2 |
| duf4302 domain-containing protein | FBD94_10085 | Not Available | Positive | 2576534 - 2577853 | 49010.8 |
| hypothetical protein | FBD94_10090 | Not Available | Negative | 2577953 - 2579014 | 39383.2 |
| hypothetical protein | FBD94_10095 | Not Available | Negative | 2579025 - 2582243 | 120668.0 |
| duf4974 domain-containing protein | FBD94_10100 | Not Available | Negative | 2582465 - 2583469 | 37770.2 |
| sigma-70 family rna polymerase sigma factor | FBD94_10105 | Not Available | Negative | 2583579 - 2584163 | 22802.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

