Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| threonine ammonia-lyase ilva | FBD94_00925 | Not Available | Negative | 218682 - 219929 | 45742.6 |
| 3-isopropylmalate dehydrogenase | FBD94_00930 | Not Available | Negative | 220015 - 221073 | 38556.2 |
| 2-isopropylmalate synthase | FBD94_00935 | Not Available | Negative | 221130 - 222647 | 56205.2 |
| 3-isopropylmalate dehydratase small subunit | FBD94_00940 | Not Available | Negative | 222674 - 223270 | 22297.3 |
| 3-isopropylmalate dehydratase large subunit | FBD94_00945 | Not Available | Negative | 223288 - 224703 | 50580.4 |
| 2-isopropylmalate synthase | FBD94_00950 | Not Available | Negative | 224746 - 225909 | 42613.9 |
| atp-binding cassette domain-containing protein | FBD94_00955 | Not Available | Negative | 225926 - 227434 | 56433.0 |
| ketol-acid reductoisomerase | FBD94_00960 | Not Available | Negative | 227491 - 228972 | 53966.1 |
| dinb family protein | FBD94_00965 | Not Available | Negative | 229014 - 229481 | 17780.3 |
| acetolactate synthase small subunit | FBD94_00970 | Not Available | Negative | 229493 - 230110 | 23959.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

