Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | FBD94_09910 | Not Available | Negative | 2530533 - 2533835 | 123035.0 |
| duf4974 domain-containing protein | FBD94_09915 | Not Available | Negative | 2534036 - 2535160 | 41639.3 |
| rna polymerase sigma-70 factor | FBD94_09920 | Not Available | Negative | 2535254 - 2535829 | 22126.8 |
| rna polymerase sigma-70 factor | FBD94_09925 | Not Available | Negative | 2535867 - 2536427 | 21737.1 |
| glycosyltransferase | FBD94_09930 | Not Available | Positive | 2537098 - 2539377 | 86573.6 |
| glycosidase | FBD94_09935 | Not Available | Negative | 2539374 - 2540891 | 57724.4 |
| porin family protein | FBD94_09940 | Not Available | Positive | 2541270 - 2541872 | 21410.3 |
| s9 family peptidase | FBD94_09945 | Not Available | Negative | 2541942 - 2544455 | 95456.0 |
| polysaccharide deacetylase family protein | FBD94_09950 | Not Available | Positive | 2544607 - 2545488 | 32782.2 |
| 3-oxoacyl-acp synthase | FBD94_09955 | Not Available | Negative | 2545550 - 2545996 | 16522.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

