Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pantetheine-phosphate adenylyltransferase | FBD94_09660 | Not Available | Positive | 2487338 - 2487799 | 17162.0 |
| nudix domain-containing protein | FBD94_09665 | Not Available | Negative | 2487821 - 2488441 | 23214.5 |
| rna polymerase sigma factor rpod/siga | FBD94_09670 | Not Available | Negative | 2488555 - 2489463 | 34649.7 |
| orotate phosphoribosyltransferase | FBD94_09675 | Not Available | Positive | 2489811 - 2490470 | 24221.0 |
| srpbcc family protein | FBD94_09680 | Not Available | Positive | 2490476 - 2490874 | 14708.7 |
| hypothetical protein | FBD94_09685 | Not Available | Negative | 2490924 - 2491529 | 22607.4 |
| mfs transporter | FBD94_09690 | Not Available | Negative | 2491583 - 2492800 | 44864.2 |
| atp-dependent chaperone clpb | FBD94_09695 | Not Available | Positive | 2492992 - 2495586 | 97227.5 |
| porin family protein | FBD94_09700 | Not Available | Positive | 2495728 - 2496366 | 23706.1 |
| porin family protein | FBD94_09705 | Not Available | Positive | 2496400 - 2497044 | 24482.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

