Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3050 domain-containing protein | FBD94_09610 | Not Available | Negative | 2474104 - 2474883 | 29327.5 |
| histidine decarboxylase | FBD94_09615 | Not Available | Positive | 2475195 - 2476334 | 42717.2 |
| efflux rnd transporter permease subunit | FBD94_09620 | Not Available | Negative | 2476482 - 2479874 | 125292.0 |
| efflux rnd transporter periplasmic adaptor subunit | FBD94_09625 | Not Available | Negative | 2479896 - 2480996 | 40103.4 |
| tolc family protein | FBD94_09630 | Not Available | Negative | 2481016 - 2482362 | 50011.2 |
| hamp domain-containing histidine kinase | FBD94_09635 | Not Available | Positive | 2482456 - 2483778 | 49739.4 |
| hypothetical protein | FBD94_09640 | Not Available | Negative | 2483775 - 2484461 | 25657.5 |
| duf2075 domain-containing protein | FBD94_09645 | Not Available | Negative | 2484481 - 2485923 | 54225.2 |
| duf3822 family protein | FBD94_09650 | Not Available | Positive | 2485976 - 2486806 | 31283.8 |
| methyltransferase domain-containing protein | FBD94_09655 | Not Available | Positive | 2486797 - 2487333 | 20381.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

