Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-deoxy-7-phosphoheptulonate synthase | FBD94_09410 | Not Available | Positive | 2426414 - 2427553 | 41796.7 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | FBD94_09415 | Not Available | Positive | 2427556 - 2428812 | 45809.9 |
| chorismate synthase | FBD94_09420 | Not Available | Positive | 2428841 - 2429929 | 38788.1 |
| transketolase | FBD94_09425 | Not Available | Negative | 2429952 - 2432375 | 89668.7 |
| duf1573 domain-containing protein | FBD94_09430 | Not Available | Positive | 2432507 - 2432899 | 14072.2 |
| pyridoxal phosphate-dependent aminotransferase | FBD94_09435 | Not Available | Positive | 2433000 - 2434202 | 44476.3 |
| Tmrna,resume consensus sequence (at 88): tataattggcgaaaataa | Not Available | Not Available | Positive | 2434269 - 2434631 | Not Available |
| pas domain s-box protein | FBD94_09445 | Not Available | Negative | 2434731 - 2436830 | 80315.1 |
| hybrid sensor histidine kinase/response regulator | FBD94_09450 | Not Available | Negative | 2436924 - 2438495 | 58461.3 |
| hamp domain-containing histidine kinase | FBD94_09455 | Not Available | Negative | 2438529 - 2439749 | 45771.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

