Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | FBD94_09105 | Not Available | Negative | 2350374 - 2353187 | 103460.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_09110 | Not Available | Negative | 2353317 - 2354969 | 61148.5 |
| tonb-dependent receptor | FBD94_09115 | Not Available | Negative | 2354983 - 2358426 | 126646.0 |
| duf4974 domain-containing protein | FBD94_09120 | Not Available | Negative | 2358469 - 2359572 | 42236.0 |
| rna polymerase sigma-70 factor | FBD94_09125 | Not Available | Negative | 2359670 - 2360251 | 22619.7 |
| prenyltransferase | FBD94_09130 | Not Available | Negative | 2360390 - 2362492 | 78364.5 |
| prenyltransferase | FBD94_09135 | Not Available | Negative | 2362485 - 2364653 | 80208.4 |
| carboxypeptidase regulatory-like domain-containing protein | FBD94_09140 | Not Available | Negative | 2364663 - 2367176 | 91778.0 |
| sugar phosphate isomerase/epimerase | FBD94_09145 | Not Available | Negative | 2367281 - 2368243 | 35813.0 |
| hypothetical protein | FBD94_09150 | Not Available | Negative | 2368265 - 2369695 | 53754.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

