Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | FBD94_09055 | Not Available | Positive | 2331625 - 2334996 | 123449.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_09060 | Not Available | Positive | 2335015 - 2336295 | 47110.2 |
| phosphodiester glycosidase family protein | FBD94_09065 | Not Available | Positive | 2336353 - 2337264 | 33148.6 |
| duf839 domain-containing protein | FBD94_09070 | Not Available | Positive | 2337284 - 2338603 | 45567.1 |
| hypothetical protein | FBD94_09075 | Not Available | Positive | 2338628 - 2340577 | 67932.8 |
| alkaline phosphatase family protein | FBD94_09080 | Not Available | Positive | 2340597 - 2342255 | 61891.0 |
| arylsulfatase | FBD94_09085 | Not Available | Negative | 2342305 - 2343705 | 51735.3 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_09090 | Not Available | Negative | 2343765 - 2345537 | 65644.5 |
| tonb-dependent receptor | FBD94_09095 | Not Available | Negative | 2345544 - 2348675 | 114910.0 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_09100 | Not Available | Negative | 2348701 - 2350362 | 61939.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

