Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ydcf family protein | FBD94_08905 | Not Available | Negative | 2298637 - 2299887 | 47416.6 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_08910 | Not Available | Negative | 2299971 - 2301338 | 50251.7 |
| tonb-dependent receptor | FBD94_08915 | Not Available | Negative | 2301349 - 2304639 | 118730.0 |
| fecr family protein | FBD94_08920 | Not Available | Negative | 2304730 - 2305755 | 38567.8 |
| nuclear transport factor 2 family protein | FBD94_08925 | Not Available | Negative | 2305933 - 2306265 | 12496.8 |
| helix-turn-helix transcriptional regulator | FBD94_08930 | Not Available | Negative | 2306276 - 2307193 | 35175.2 |
| sdr family oxidoreductase | FBD94_08935 | Not Available | Negative | 2307198 - 2308007 | 29421.4 |
| sigma-70 family rna polymerase sigma factor | FBD94_08940 | Not Available | Negative | 2308173 - 2308721 | 21608.2 |
| ghkl domain-containing protein | FBD94_08945 | Not Available | Positive | 2308942 - 2309994 | 40272.8 |
| response regulator | FBD94_08950 | Not Available | Positive | 2310012 - 2310452 | 16456.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

