Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferritin-like domain-containing protein | FBD94_08655 | Not Available | Negative | 2247968 - 2248699 | 26234.2 |
| response regulator transcription factor | FBD94_08660 | Not Available | Positive | 2248894 - 2249673 | 29248.9 |
| diguanylate cyclase | FBD94_08665 | Not Available | Positive | 2249708 - 2252614 | 111404.0 |
| hypothetical protein | FBD94_08670 | Not Available | Positive | 2253016 - 2253210 | 7416.9 |
| gnat family n-acetyltransferase | FBD94_08675 | Not Available | Positive | 2253282 - 2254400 | 43492.9 |
| xre family transcriptional regulator | FBD94_08680 | Not Available | Negative | 2254403 - 2254732 | 12582.3 |
| peptidoglycan synthetase | FBD94_08685 | Not Available | Negative | 2254762 - 2256129 | 51021.4 |
| 50s ribosomal protein l11 methyltransferase | FBD94_08690 | Not Available | Negative | 2256143 - 2256982 | 31652.5 |
| triose-phosphate isomerase | FBD94_08695 | Not Available | Negative | 2256982 - 2257743 | 27598.9 |
| glucose-1-phosphate thymidylyltransferase | FBD94_08700 | Not Available | Negative | 2257797 - 2258972 | 43645.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

