Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dicarboxylate/amino acid:cation symporter | FBD94_08505 | Not Available | Negative | 2209710 - 2211095 | 50237.1 |
| sigma-70 family rna polymerase sigma factor | FBD94_08510 | Not Available | Positive | 2211243 - 2211740 | 19507.3 |
| nrt1/ptr family mfs transporter | FBD94_08515 | Not Available | Positive | 2211727 - 2212323 | 23401.8 |
| helix-turn-helix transcriptional regulator | FBD94_08520 | Not Available | Negative | 2212475 - 2213332 | 33292.8 |
| voc family protein | FBD94_08525 | Not Available | Negative | 2213352 - 2213714 | 13730.4 |
| atpase | FBD94_08530 | Not Available | Positive | 2213928 - 2216792 | 107877.0 |
| response regulator transcription factor | FBD94_08535 | Not Available | Positive | 2216804 - 2217436 | 23275.3 |
| hypothetical protein | FBD94_08540 | Not Available | Negative | 2217459 - 2218082 | 22792.3 |
| beta-n-acetylhexosaminidase | FBD94_08545 | Not Available | Negative | 2218105 - 2220009 | 70821.0 |
| thioredoxin-disulfide reductase | FBD94_08550 | Not Available | Negative | 2220157 - 2221119 | 34500.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

