Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate-1-semialdehyde-2,1-aminomutase | FBD94_00770 | Not Available | Positive | 178577 - 179950 | 49813.6 |
| hamp domain-containing histidine kinase | FBD94_00775 | Not Available | Positive | 179988 - 180854 | 32442.7 |
| response regulator transcription factor | FBD94_00780 | Not Available | Positive | 180857 - 181561 | 27368.4 |
| hypothetical protein | FBD94_00785 | Not Available | Positive | 181561 - 182076 | 19526.7 |
| uroporphyrinogen decarboxylase | FBD94_00790 | Not Available | Positive | 182104 - 183126 | 38032.5 |
| protoporphyrinogen oxidase hemj | FBD94_00795 | Not Available | Positive | 183134 - 183682 | 21464.1 |
| abc transporter atp-binding protein | FBD94_00800 | Not Available | Positive | 183705 - 184697 | 36813.7 |
| carboxypeptidase-like regulatory domain-containing protein | FBD94_00805 | Not Available | Positive | 184859 - 187429 | 98745.5 |
| hypothetical protein | FBD94_00810 | Not Available | Negative | 187488 - 187907 | 14937.0 |
| duf4625 domain-containing protein | FBD94_00815 | Not Available | Negative | 187959 - 188435 | 17770.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

