Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine kinase | FBD94_08355 | Not Available | Positive | 2175900 - 2176919 | 39474.4 |
| response regulator transcription factor | FBD94_08360 | Not Available | Positive | 2176900 - 2177661 | 29518.8 |
| alpha/beta hydrolase | FBD94_08365 | Not Available | Positive | 2177807 - 2178721 | 33434.1 |
| sigma-54-dependent fis family transcriptional regulator | FBD94_08370 | Not Available | Negative | 2178726 - 2180117 | 51637.1 |
| lyttr family transcriptional regulator | FBD94_08375 | Not Available | Positive | 2180467 - 2180910 | 17276.9 |
| alpha/beta hydrolase | FBD94_08380 | Not Available | Negative | 2180936 - 2181973 | 38197.9 |
| hypothetical protein | FBD94_08385 | Not Available | Negative | 2181984 - 2182700 | 27595.4 |
| epoxide hydrolase | FBD94_08390 | Not Available | Negative | 2182728 - 2183999 | 46514.4 |
| epoxide hydrolase | FBD94_08395 | Not Available | Positive | 2184368 - 2185663 | 48310.7 |
| thioredoxin family protein | FBD94_08400 | Not Available | Negative | 2185779 - 2186942 | 45566.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

