Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | FBD94_08055 | Not Available | Negative | 2106221 - 2109475 | 120623.0 |
| duf4974 domain-containing protein | FBD94_08060 | Not Available | Negative | 2109563 - 2110594 | 38692.6 |
| rna polymerase sigma factor | FBD94_08065 | Not Available | Negative | 2110650 - 2111219 | 22086.8 |
| gfo/idh/moca family oxidoreductase | FBD94_08070 | Not Available | Negative | 2111393 - 2112478 | 39790.2 |
| gfo/idh/moca family oxidoreductase | FBD94_08075 | Not Available | Negative | 2112494 - 2113951 | 54167.7 |
| duf1080 domain-containing protein | FBD94_08080 | Not Available | Negative | 2113972 - 2117400 | 123270.0 |
| gfo/idh/moca family oxidoreductase | FBD94_08085 | Not Available | Negative | 2117450 - 2118730 | 47743.1 |
| rok family protein | FBD94_08090 | Not Available | Positive | 2118918 - 2120189 | 46238.7 |
| j domain-containing protein | FBD94_08095 | Not Available | Positive | 2120269 - 2121207 | 34766.9 |
| hypothetical protein | FBD94_08100 | Not Available | Positive | 2121219 - 2121509 | 11264.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

