Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| porin family protein | FBD94_00720 | Not Available | Negative | 168667 - 169476 | 29410.0 |
| lipid a deacylase lpxr family protein | FBD94_00725 | Not Available | Negative | 169689 - 170705 | 38426.9 |
| tetr/acrr family transcriptional regulator | FBD94_00730 | Not Available | Positive | 170895 - 171485 | 22585.5 |
| hypothetical protein | FBD94_00735 | Not Available | Positive | 171528 - 171752 | 8616.61 |
| mfs transporter | FBD94_00740 | Not Available | Positive | 171784 - 173016 | 44460.4 |
| hypothetical protein | FBD94_00745 | Not Available | Positive | 173087 - 173731 | 24221.0 |
| alpha/beta hydrolase | FBD94_00750 | Not Available | Negative | 173694 - 174548 | 31749.7 |
| glutamyl-trna reductase | FBD94_00755 | Not Available | Positive | 174722 - 175948 | 46722.9 |
| hydroxymethylbilane synthase | FBD94_00760 | Not Available | Positive | 175967 - 177550 | 59078.9 |
| porphobilinogen synthase | FBD94_00765 | Not Available | Positive | 177560 - 178528 | 35778.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

