Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arginase | FBD94_07845 | Not Available | Negative | 2057276 - 2058253 | 36233.2 |
| ornithine--oxo-acid transaminase | FBD94_07850 | Not Available | Negative | 2058260 - 2059519 | 45838.0 |
| lrp/asnc family transcriptional regulator | FBD94_07855 | Not Available | Positive | 2059667 - 2060119 | 17079.8 |
| hypothetical protein | FBD94_07860 | Not Available | Positive | 2060256 - 2061098 | 32198.2 |
| duf1810 domain-containing protein | FBD94_07865 | Not Available | Positive | 2061150 - 2061584 | 16480.2 |
| hypothetical protein | FBD94_07875 | Not Available | Positive | 2062236 - 2062445 | 7809.19 |
| lysr family transcriptional regulator | FBD94_07880 | Not Available | Negative | 2062535 - 2063431 | 33625.8 |
| l-lysine dehydrogenase | FBD94_07885 | Not Available | Positive | 2063508 - 2064569 | 38999.1 |
| duf1338 domain-containing protein | FBD94_07890 | Not Available | Positive | 2064577 - 2065482 | 35005.5 |
| aldehyde dehydrogenase family protein | FBD94_07895 | Not Available | Positive | 2065497 - 2067026 | 55052.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

