Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | FBD94_07735 | Not Available | Negative | 2026577 - 2028328 | 65432.2 |
| carbohydrate kinase | FBD94_07745 | Not Available | Negative | 2031560 - 2032477 | 34122.6 |
| sugar porter family mfs transporter | FBD94_07750 | Not Available | Negative | 2032484 - 2033812 | 48613.1 |
| helix-turn-helix domain-containing protein | FBD94_07755 | Not Available | Positive | 2034149 - 2036917 | 103467.0 |
| two pore domain potassium channel family protein | FBD94_07760 | Not Available | Negative | 2036914 - 2037528 | 23151.9 |
| pas domain s-box protein | FBD94_07765 | Not Available | Positive | 2037800 - 2039248 | 55074.4 |
| methyltransferase domain-containing protein | FBD94_07770 | Not Available | Positive | 2040470 - 2041096 | 23613.2 |
| universal stress protein | FBD94_07775 | Not Available | Positive | 2041277 - 2041774 | 18741.6 |
| hypothetical protein | FBD94_07780 | Not Available | Positive | 2041795 - 2042583 | 30127.1 |
| universal stress protein | FBD94_07785 | Not Available | Negative | 2042638 - 2043525 | 32809.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

