Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | FBD94_07580 | Not Available | Negative | 1996370 - 1997962 | 59661.9 |
| hlyd family secretion protein | FBD94_07585 | Not Available | Negative | 1997959 - 1999008 | 38502.1 |
| tolc family protein | FBD94_07590 | Not Available | Negative | 1999025 - 2000356 | 49253.6 |
| helix-turn-helix transcriptional regulator | FBD94_07595 | Not Available | Negative | 2000494 - 2001357 | 33175.1 |
| helix-turn-helix transcriptional regulator | FBD94_07600 | Not Available | Negative | 2001359 - 2001727 | 14001.1 |
| doxx family protein | FBD94_07605 | Not Available | Positive | 2001843 - 2002220 | 14027.3 |
| fmn-dependent nadh-azoreductase | FBD94_07610 | Not Available | Positive | 2002233 - 2002856 | 22470.1 |
| epoxide hydrolase 1 | FBD94_07615 | Not Available | Negative | 2002922 - 2004136 | 45116.6 |
| epoxide hydrolase | FBD94_07620 | Not Available | Negative | 2004223 - 2005488 | 47194.3 |
| hypothetical protein | FBD94_07625 | Not Available | Negative | 2005467 - 2005778 | 11860.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

