Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tlpa family protein disulfide reductase | FBD94_07530 | Not Available | Negative | 1984190 - 1985161 | 36130.6 |
| hypothetical protein | FBD94_07535 | Not Available | Negative | 1985315 - 1986871 | 57661.1 |
| duf4843 domain-containing protein | FBD94_07540 | Not Available | Negative | 1986884 - 1987597 | 26848.7 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_07545 | Not Available | Negative | 1987609 - 1989108 | 56254.9 |
| susc/raga family tonb-linked outer membrane protein | FBD94_07550 | Not Available | Negative | 1989121 - 1992522 | 126129.0 |
| fecr family protein | FBD94_07555 | Not Available | Negative | 1992639 - 1993739 | 40614.4 |
| rna polymerase sigma-70 factor | FBD94_07560 | Not Available | Negative | 1993824 - 1994390 | 22429.1 |
| glyoxalase | FBD94_07565 | Not Available | Positive | 1994462 - 1994812 | 13058.5 |
| aldo/keto reductase | FBD94_07570 | Not Available | Positive | 1994961 - 1995878 | 33566.1 |
| g/u mismatch-specific dna glycosylase | FBD94_07575 | Not Available | Positive | 1995868 - 1996380 | 19280.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

