Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| discoidin domain-containing protein | FBD94_07430 | Not Available | Negative | 1950384 - 1950923 | 19660.4 |
| sulfatase | FBD94_07435 | Not Available | Positive | 1951153 - 1952508 | 51025.1 |
| glycoside hydrolase | FBD94_07440 | Not Available | Negative | 1952514 - 1953578 | 40392.7 |
| glycosyl hydrolase | FBD94_07445 | Not Available | Negative | 1953593 - 1954699 | 42615.2 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_07450 | Not Available | Negative | 1954720 - 1956648 | 73120.3 |
| susc/raga family tonb-linked outer membrane protein | FBD94_07455 | Not Available | Negative | 1956660 - 1959992 | 124594.0 |
| duf4965 domain-containing protein | FBD94_07460 | Not Available | Negative | 1960001 - 1962448 | 90731.8 |
| 1,4-beta-xylanase | FBD94_07465 | Not Available | Negative | 1962480 - 1963439 | 35658.2 |
| duf4973 domain-containing protein | FBD94_07470 | Not Available | Negative | 1963483 - 1964490 | 39220.7 |
| ragb/susd family nutrient uptake outer membrane protein | FBD94_07475 | Not Available | Negative | 1964510 - 1966588 | 78394.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

