Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter hiemivivus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter hiemivivus strain RP-1-16 contig36, whole genome
Gene Summary
Adenine Count
1965080 bp
Thymine Count
1938424 bp
Guanine Count
1297924 bp
Cytosine Count
1239067 bp
Genome Length
6440511 bp
Protein-coding Genes
5065 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor | FBD94_06575 | Not Available | Negative | 1742679 - 1743284 | 23453.9 |
| fecr family protein | FBD94_06580 | Not Available | Positive | 1743391 - 1744542 | 43297.9 |
| tolc family protein | FBD94_06585 | Not Available | Positive | 1745080 - 1746420 | 51082.6 |
| hlyd family secretion protein | FBD94_06590 | Not Available | Positive | 1746422 - 1747489 | 39367.7 |
| mfs transporter | FBD94_06595 | Not Available | Positive | 1747482 - 1749077 | 59909.6 |
| dinb family protein | FBD94_06600 | Not Available | Positive | 1749161 - 1749640 | 18111.7 |
| efflux rnd transporter periplasmic adaptor subunit | FBD94_06605 | Not Available | Positive | 1749735 - 1750817 | 40218.4 |
| efflux rnd transporter permease subunit | FBD94_06610 | Not Available | Positive | 1750839 - 1754015 | 115922.0 |
| tolc family protein | FBD94_06615 | Not Available | Positive | 1754002 - 1755435 | 53416.0 |
| amino acid adenylation domain-containing protein | FBD94_06620 | Not Available | Positive | 1755877 - 1758564 | 100788.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

